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| Shortstops Single-Season Runs Leaderboard | |
| * - Indicates Hall of Fame |
| Rank | Player | Runs | PA | Year | Career Leaderboard |
| 1. | Gandalf Greyheme * | 153 | 713 | 2005 | |
| 2. | Gandalf Greyheme * | 145 | 646 | 2007 | |
| 3. | Gandalf Greyheme * | 140 | 703 | 2011 | |
| 4. | Gandalf Greyheme * | 136 | 720 | 2006 | |
| 5. | Santo Tedesco | 133 | 686 | 2027 | |
| 6. | Tanner Chayse * | 131 | 661 | 2007 | |
| 7. | Rudy Lareau | 129 | 681 | 2018 | |
| Tanner Chayse * | 129 | 653 | 2005 | ||
| 9. | Mark Delia * | 128 | 672 | 2008 | |
| 10. | Michael Koo Jr * | 126 | 697 | 2008 | |
| Gandalf Greyheme * | 126 | 684 | 2008 | ||
| 12. | Santo Tedesco | 125 | 715 | 2029 | |
| Gandalf Greyheme * | 125 | 688 | 2013 | ||
| 14. | Santo Tedesco | 124 | 693 | 2028 | |
| 15. | Tanner Chayse * | 123 | 654 | 2006 | |
| 16. | Jason Kroner * | 122 | 655 | 2007 | |
| 17. | Michael Koo Jr * | 121 | 700 | 2007 | |
| 18. | Gandalf Greyheme * | 118 | 685 | 2009 | |
| 19. | Rudy Lareau | 117 | 661 | 2017 | |
| Matt McQuade * | 117 | 646 | 2015 | ||
| Gandalf Greyheme * | 117 | 677 | 2010 | ||
| 22. | Jason Kroner * | 116 | 684 | 2011 | |
| 23. | Michael Koo Jr * | 115 | 647 | 2012 | |
| Matt McQuade * | 115 | 677 | 2010 | ||
| Tanner Chayse * | 115 | 628 | 2010 | ||
| Francisco Magana | 115 | 698 | 2001 | ||
| 27. | Mark Delia * | 114 | 690 | 2013 | |
| Tanner Chayse * | 114 | 652 | 2009 | ||
| 29. | Flyswatter Pentecost | 113 | 671 | 2026 | |
| 30. | Gandalf Greyheme * | 112 | 698 | 2014 | |
| 31. | Mark Delia * | 111 | 669 | 2016 | |
| Matt McQuade * | 111 | 659 | 2013 | ||
| 33. | Rafael Pocovi | 110 | 683 | 2026 | |
| Michael Koo Jr * | 110 | 669 | 2009 | ||
| 35. | Santo Tedesco | 109 | 639 | 2023 | |
| Casey Wabash | 109 | 652 | 2016 | ||
| Matt McQuade * | 109 | 652 | 2006 | ||
| 38. | Rudy Lareau | 108 | 583 | 2020 | |
| Matt McQuade * | 108 | 656 | 2007 | ||
| 40. | Matt McQuade * | 107 | 660 | 2011 | |
| 41. | Jason Kroner * | 106 | 651 | 2013 | |
| Francisco Magana | 106 | 705 | 2000 | ||
| 43. | Norman Bates | 105 | 677 | 2008 | |
| Jason Kroner * | 105 | 658 | 2006 | ||
| Mark Delia * | 105 | 650 | 2006 | ||
| 46. | Santo Tedesco | 104 | 659 | 2024 | |
| Michael Koo Jr * | 104 | 674 | 2016 | ||
| Matt McQuade * | 104 | 617 | 2009 | ||
| Jason Kroner * | 104 | 675 | 2004 | ||
| Tanner Chayse * | 104 | 650 | 2004 | ||
| 51. | Buzzy Stevens | 103 | 641 | 2028 | |
| Rafael Pocovi | 103 | 648 | 2027 | ||
| Norman Bates | 103 | 667 | 2006 | ||
| Michael Koo Jr * | 103 | 690 | 2003 | ||
| 55. | Rudy Lareau | 102 | 636 | 2016 | |
| Chris Lott | 102 | 654 | 2012 | ||
| Jason Kroner * | 102 | 685 | 2010 | ||
| Michael Koo Jr * | 102 | 683 | 2006 | ||
| 59. | Mark Delia * | 101 | 687 | 2014 | |
| Michael Koo Jr * | 101 | 664 | 2013 | ||
| Michael Koo Jr * | 101 | 586 | 2004 | ||
| 62. | Mark Vanman | 100 | 683 | 2029 | |
| Fred Haigney | 100 | 650 | 2024 | ||
| Flyswatter Pentecost | 100 | 659 | 2022 | ||
| Santo Tedesco | 100 | 660 | 2020 | ||
| Gandalf Greyheme * | 100 | 665 | 2015 | ||
| Matt McQuade * | 100 | 646 | 2014 | ||
| Chris Lott | 100 | 635 | 2009 | ||
| Jerry Pyne | 100 | 681 | 2000 | ||
| 70. | Santo Tedesco | 99 | 640 | 2026 | |
| Santo Tedesco | 99 | 677 | 2021 | ||
| Michael Koo Jr * | 99 | 676 | 2014 | ||
| Matt McQuade * | 99 | 668 | 2012 | ||
| Garry Piccirillo | 99 | 657 | 2000 | ||
| 75. | Flyswatter Pentecost | 98 | 658 | 2025 | |
| Alex Sullins | 98 | 669 | 2019 | ||
| Rudy Lareau | 98 | 642 | 2013 | ||
| Mark Delia * | 98 | 655 | 2011 | ||
| Tanner Chayse * | 98 | 478 | 2008 | ||
| 80. | Luis Ortiz | 97 | 676 | 2021 | |
| Alex Sullins | 97 | 665 | 2020 | ||
| Michael Koo Jr * | 97 | 640 | 2015 | ||
| Jason Kroner * | 97 | 643 | 2014 | ||
| Gandalf Greyheme * | 97 | 491 | 2012 | ||
| Mark Delia * | 97 | 555 | 2009 | ||
| Michael Koo Jr * | 97 | 680 | 2005 | ||
| Gandalf Greyheme * | 97 | 679 | 2004 | ||
| 88. | Salvino Derivera | 96 | 655 | 2029 | |
| Arturo Esquiuel | 96 | 657 | 2028 | ||
| Marquez Revolario | 96 | 646 | 2028 | ||
| Mark Delia * | 96 | 667 | 2004 | ||
| Mark Delia * | 96 | 640 | 2003 | ||
| 93. | Chris Lott | 95 | 627 | 2016 | |
| Chris Lott | 95 | 646 | 2014 | ||
| Chris Lott | 95 | 709 | 2011 | ||
| Mark Delia * | 95 | 657 | 2010 | ||
| Michael Koo Jr * | 95 | 604 | 2010 | ||
| Andrew Brown | 95 | 635 | 2009 | ||
| Mark Delia * | 95 | 645 | 2007 | ||
| James Hendricks | 95 | 656 | 2000 |
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