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| Shortstops Career Runs Leaderboard | |
| * - Indicates Hall of Fame Bold - Indicates active player |
| Rank | Player | Runs | PA | Years | Single Season Leaderboard |
| 1. | Michael Koo Jr * | 1851 | 12588 | 2000-2019 | |
| 2. | Gandalf Greyheme * | 1789 | 11069 | 2003-2020 | |
| 3. | Tanner Chayse * | 1684 | 11089 | 2000-2017 | |
| 4. | Matt McQuade * | 1638 | 10532 | 2003-2020 | |
| 5. | Mark Delia * | 1622 | 11162 | 2000-2018 | |
| 6. | Jason Kroner * | 1489 | 10707 | 2000-2018 | |
| 7. | Norman Bates | 1217 | 10477 | 2002-2020 | |
| 8. | Rudy Lareau | 1206 | 7843 | 2010-2025 | |
| 9. | Chris Lott | 1095 | 8546 | 2005-2018 | |
| 10. | Alex Sullins | 1071 | 8750 | 2011-2025 | |
| 11. | Santo Tedesco | 1066 | 6445 | 2019-2029 | |
| 12. | Joseph Gardiner | 1045 | 7992 | 2008-2022 | |
| 13. | Luis Ortiz | 996 | 8272 | 2015-2029 | |
| 14. | Andrew Brown | 963 | 7828 | 2001-2016 | |
| 15. | Jerrold Dukes | 945 | 9087 | 2008-2024 | |
| 16. | John McDonald | 895 | 7704 | 2005-2018 | |
| 17. | Casey Wabash | 842 | 6774 | 2014-2026 | |
| 18. | Matthew Maglio | 819 | 7035 | 2005-2019 | |
| 19. | Mark Hall | 770 | 7290 | 2011-2023 | |
| 20. | Archy Miller Jr | 769 | 7926 | 2006-2024 | |
| 21. | Flyswatter Pentecost | 735 | 5196 | 2020-2029 | |
| 22. | Chris Federith | 715 | 6290 | 2019-2029 | |
| 23. | Joseph Mentzer | 639 | 6325 | 2000-2010 | |
| 24. | Lane Greene | 633 | 6063 | 2008-2020 | |
| 25. | Robert Petro | 631 | 5406 | 2016-2029 | |
| 26. | Jose Decambra | 630 | 6444 | 2009-2021 | |
| 27. | Lazlo Szabonagy | 616 | 6993 | 2005-2021 | |
| 28. | James Hendricks | 581 | 4586 | 2000-2008 | |
| 29. | Robert Wyatt | 572 | 4949 | 2001-2011 | |
| 30. | Manuel Talamantez | 569 | 5737 | 2005-2017 | |
| 31. | Lester Griffey | 561 | 5401 | 2013-2029 | |
| 32. | Steven Wynn | 551 | 4964 | 2000-2012 | |
| 33. | Willie Tyler | 540 | 4174 | 2003-2018 | |
| 34. | Fred Haigney | 536 | 3866 | 2023-2029 | |
| 35. | Richard Tasker | 535 | 4861 | 2004-2017 | |
| 36. | James Evenson | 534 | 5017 | 2019-2029 | |
| 37. | Rafael Pocovi | 515 | 3671 | 2024-2029 | |
| 38. | Donald Toman | 510 | 5643 | 2004-2015 | |
| 39. | Rex Spikes | 487 | 5012 | 2006-2019 | |
| 40. | Tony Luna | 477 | 4525 | 2013-2023 | |
| 41. | Timothy Montag | 448 | 4444 | 2007-2015 | |
| 42. | Cipri Font | 440 | 4610 | 2012-2022 | |
| 43. | Jeff Magee | 437 | 4521 | 2017-2029 | |
| 44. | Lanny Pennock | 430 | 4064 | 2000-2010 | |
| 45. | Albert Cepeda | 420 | 4170 | 2000-2010 | |
| 46. | Benjamin Vasquez | 413 | 3503 | 2000-2008 | |
| 47. | Matthew Courtney | 410 | 3421 | 2015-2026 | |
| Timothy Fortier | 410 | 4049 | 2013-2022 | ||
| 49. | Leo Ryan | 402 | 3202 | 2000-2010 | |
| 50. | Francisco Magana | 376 | 2648 | 2000-2003 | |
| 51. | Jeffrey Pyles | 375 | 4744 | 2000-2015 | |
| 52. | Joe Berard | 374 | 4254 | 2007-2019 | |
| 53. | Mark Vanman | 368 | 3355 | 2020-2029 | |
| 54. | Salvino Derivera | 364 | 3109 | 2023-2029 | |
| 55. | David Bowers | 351 | 3463 | 2011-2022 | |
| 56. | Bob Duran | 350 | 3226 | 2023-2029 | |
| 57. | Bob Jahn | 348 | 3294 | 2015-2020 | |
| 58. | Mark Risch | 339 | 2452 | 2000-2013 | |
| 59. | Al Beaudoin | 333 | 2382 | 2024-2029 | |
| 60. | Ramone Arais | 328 | 3330 | 2023-2029 | |
| 61. | Carlos Gomez | 324 | 3805 | 2003-2013 | |
| 62. | Mauricio Decosta | 323 | 2992 | 2002-2012 | |
| 63. | Zack Loranger | 322 | 3339 | 2010-2019 | |
| 64. | Bill Prosser | 304 | 2742 | 2016-2029 | |
| Garry Piccirillo | 304 | 2677 | 2000-2004 | ||
| 66. | Jeremy Austin | 300 | 2614 | 2023-2029 | |
| Clinton Averett | 300 | 2752 | 2000-2004 | ||
| 68. | Ethan Kennedy | 298 | 2803 | 2023-2029 | |
| 69. | Marcelo Cancio | 282 | 3060 | 2016-2024 | |
| 70. | Ron Salas | 280 | 2333 | 2023-2029 | |
| Marquez Revolario | 280 | 2020 | 2026-2029 | ||
| 72. | Hector Castruita | 279 | 2447 | 2020-2029 | |
| 73. | Sherm Allred | 272 | 2764 | 2016-2029 | |
| 74. | Jerry Pyne | 254 | 1803 | 2000-2004 | |
| 75. | Carol Hoover | 251 | 2507 | 2000-2008 | |
| 76. | Armand Manning | 250 | 2874 | 2001-2010 | |
| 77. | Lesley Hamm | 249 | 2173 | 2024-2029 | |
| 78. | Bill Lanctot | 232 | 2352 | 2000-2012 | |
| James Ibanez | 232 | 2343 | 2000-2006 | ||
| 80. | Earl McEvoy | 230 | 2266 | 2022-2029 | |
| 81. | Arturo Esquiuel | 227 | 1927 | 2027-2029 | |
| 82. | Bill Graham | 224 | 2570 | 2018-2027 | |
| 83. | Wendell Granger | 217 | 1946 | 2000-2004 | |
| 84. | Pat Eckard | 213 | 2088 | 2025-2029 | |
| Patrick Cleek | 213 | 2768 | 2000-2007 | ||
| 86. | Everett Shippee | 212 | 1802 | 2027-2029 | |
| 87. | Hikaro Kinji | 206 | 2115 | 2002-2008 | |
| 88. | Angelo De Leon | 203 | 1850 | 2018-2025 | |
| 89. | Mitch Nickle | 198 | 2338 | 2003-2013 | |
| 90. | Jarvis Henderson | 197 | 2344 | 2020-2028 | |
| 91. | Kyle Warner | 195 | 2227 | 2021-2027 | |
| 92. | Geraldo Gutierrez | 194 | 1729 | 2000-2011 | |
| 93. | Drew Phillips | 193 | 2050 | 2025-2029 | |
| Buzzy Stevens | 193 | 1106 | 2028-2029 | ||
| 95. | Luther Shelton | 191 | 2078 | 2020-2029 | |
| 96. | Pedro Lomeli | 185 | 2381 | 2008-2019 | |
| 97. | Leon Rego | 182 | 1577 | 2012-2021 | |
| 98. | Louis Woods | 179 | 1170 | 2004-2012 | |
| Bradley Davis | 179 | 1839 | 2000-2003 | ||
| 100. | Wilfredo Grajeda | 170 | 1706 | 2000-2004 |
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