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| Shortstops Single-Season Homeruns Leaderboard | |
| * - Indicates Hall of Fame |
| Rank | Player | Homeruns | PA | Year | Career Leaderboard |
| 1. | Francisco Magana | 57 | 698 | 2001 | |
| 2. | Tanner Chayse * | 46 | 653 | 2005 | |
| 3. | Francisco Magana | 45 | 647 | 2002 | |
| 4. | Chris Lott | 41 | 646 | 2014 | |
| Francisco Magana | 41 | 705 | 2000 | ||
| 6. | Tanner Chayse * | 40 | 661 | 2007 | |
| 7. | Matthew Maglio | 38 | 576 | 2010 | |
| 8. | Tanner Chayse * | 37 | 652 | 2009 | |
| Tanner Chayse * | 37 | 654 | 2006 | ||
| 10. | Rudy Lareau | 36 | 661 | 2017 | |
| 11. | Chris Lott | 34 | 635 | 2009 | |
| Joseph Mentzer | 34 | 688 | 2000 | ||
| 13. | Rudy Lareau | 33 | 645 | 2021 | |
| Rudy Lareau | 33 | 681 | 2018 | ||
| Matthew Maglio | 33 | 600 | 2018 | ||
| Andrew Brown | 33 | 634 | 2011 | ||
| Tanner Chayse * | 33 | 478 | 2008 | ||
| Joseph Mentzer | 33 | 621 | 2007 | ||
| 19. | Gandalf Greyheme * | 32 | 703 | 2011 | |
| Andrew Brown | 32 | 637 | 2010 | ||
| 21. | Santo Tedesco | 31 | 686 | 2027 | |
| Rafael Pocovi | 31 | 683 | 2026 | ||
| Santo Tedesco | 31 | 639 | 2023 | ||
| Chris Lott | 31 | 627 | 2016 | ||
| 25. | Santo Tedesco | 30 | 715 | 2029 | |
| Flyswatter Pentecost | 30 | 671 | 2026 | ||
| Rudy Lareau | 30 | 583 | 2020 | ||
| Chris Lott | 30 | 563 | 2017 | ||
| Mark Delia * | 30 | 669 | 2016 | ||
| Rudy Lareau | 30 | 636 | 2016 | ||
| Chris Lott | 30 | 659 | 2013 | ||
| Chris Lott | 30 | 709 | 2011 | ||
| Garry Piccirillo | 30 | 657 | 2000 | ||
| 34. | Fred Haigney | 29 | 631 | 2028 | |
| Matthew Maglio | 29 | 625 | 2012 | ||
| Wilfredo Grajeda | 29 | 613 | 2001 | ||
| 37. | Salvino Derivera | 28 | 655 | 2029 | |
| Matthew Maglio | 28 | 612 | 2017 | ||
| Matthew Maglio | 28 | 616 | 2011 | ||
| Andrew Brown | 28 | 692 | 2005 | ||
| James Hendricks | 28 | 656 | 2000 | ||
| 42. | Santo Tedesco | 27 | 660 | 2020 | |
| Matthew Maglio | 27 | 561 | 2016 | ||
| Chris Lott | 27 | 654 | 2012 | ||
| Chris Lott | 27 | 645 | 2010 | ||
| Andrew Brown | 27 | 635 | 2009 | ||
| Andrew Brown | 27 | 677 | 2006 | ||
| Clinton Averett | 27 | 574 | 2002 | ||
| James Hendricks | 27 | 631 | 2001 | ||
| 50. | Salvino Derivera | 26 | 633 | 2028 | |
| Tanner Chayse * | 26 | 628 | 2010 | ||
| James Hendricks | 26 | 606 | 2002 | ||
| 53. | Chris Federith | 25 | 629 | 2029 | |
| Buzzy Stevens | 25 | 465 | 2029 | ||
| Rafael Pocovi | 25 | 648 | 2027 | ||
| Fred Haigney | 25 | 648 | 2027 | ||
| Flyswatter Pentecost | 25 | 632 | 2027 | ||
| Santo Tedesco | 25 | 659 | 2024 | ||
| Gandalf Greyheme * | 25 | 698 | 2014 | ||
| Mark Delia * | 25 | 687 | 2014 | ||
| Jason Kroner * | 25 | 643 | 2014 | ||
| Gandalf Greyheme * | 25 | 688 | 2013 | ||
| Andrew Brown | 25 | 618 | 2012 | ||
| Mark Delia * | 25 | 655 | 2011 | ||
| James Hendricks | 25 | 504 | 2004 | ||
| 66. | Chris Federith | 24 | 638 | 2025 | |
| Rudy Lareau | 24 | 603 | 2022 | ||
| Jerrold Dukes | 24 | 510 | 2019 | ||
| Joseph Mentzer | 24 | 697 | 2008 | ||
| Joseph Mentzer | 24 | 607 | 2005 | ||
| Joseph Mentzer | 24 | 575 | 2004 | ||
| Leo Ryan | 24 | 627 | 2000 | ||
| 73. | Alex Sullins | 23 | 665 | 2020 | |
| Rudy Lareau | 23 | 591 | 2015 | ||
| Gandalf Greyheme * | 23 | 684 | 2008 | ||
| Mark Delia * | 23 | 672 | 2008 | ||
| Joseph Mentzer | 23 | 639 | 2006 | ||
| Francisco Magana | 23 | 598 | 2003 | ||
| Garry Piccirillo | 23 | 619 | 2001 | ||
| 80. | Arturo Esquiuel | 22 | 644 | 2029 | |
| Chris Federith | 22 | 648 | 2028 | ||
| Santo Tedesco | 22 | 640 | 2026 | ||
| Rafael Pocovi | 22 | 587 | 2025 | ||
| Clinton Averett | 22 | 676 | 2001 | ||
| Leo Ryan | 22 | 657 | 2001 | ||
| Jerry Pyne | 22 | 681 | 2000 | ||
| Christopher Kass | 22 | 488 | 2000 | ||
| 88. | Santo Tedesco | 21 | 693 | 2028 | |
| Fred Haigney | 21 | 639 | 2025 | ||
| Casey Wabash | 21 | 652 | 2016 | ||
| Chris Lott | 21 | 659 | 2015 | ||
| Matthew Maglio | 21 | 582 | 2015 | ||
| David Bowers | 21 | 456 | 2015 | ||
| Jason Kroner * | 21 | 651 | 2013 | ||
| Tanner Chayse * | 21 | 638 | 2013 | ||
| Matthew Maglio | 21 | 465 | 2013 | ||
| Gandalf Greyheme * | 21 | 491 | 2012 | ||
| Joseph Mentzer | 21 | 624 | 2009 | ||
| Andrew Brown | 21 | 674 | 2008 | ||
| Chris Lott | 21 | 633 | 2007 |
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